Index

B

barabasi_albert_graph_nx() (in module NEMtropy.matrix_generator) build_graph_fast() (in module NEMtropy.network_functions) build_graph_fast_weighted() (in module NEMtropy.network_functions)

build_graph_from_edgelist() (in module NEMtropy.network_functions) build_graph_sparse() (in module NEMtropy.network_functions) build_graph_sparse_weighted() (in module NEMtropy.network_functions)

C

clean_edges() (NEMtropy.graph_classes.DirectedGraph method) (NEMtropy.graph_classes.UndirectedGraph method)

D

degree() (in module NEMtropy.network_functions) degree_reduction() (NEMtropy.graph_classes.DirectedGraph method) (NEMtropy.graph_classes.UndirectedGraph method)

DirectedGraph (class in NEMtropy.graph_classes)

E

edgelist_from_edgelist_directed() (in module NEMtropy.network_functions) edgelist_from_edgelist_undirected() (in module NEMtropy.network_functions) ensemble_sampler() (NEMtropy.graph_classes.DirectedGraph method) (NEMtropy.graph_classes.UndirectedGraph method) ensemble_sampler_cm_graph() (in module NEMtropy.ensemble_generator) ensemble_sampler_crema_decm_det_graph() (in module NEMtropy.ensemble_generator) ensemble_sampler_crema_decm_prob_graph() (in module NEMtropy.ensemble_generator) ensemble_sampler_crema_ecm_det_graph() (in module NEMtropy.ensemble_generator) ensemble_sampler_crema_ecm_prob_graph() (in module NEMtropy.ensemble_generator) ensemble_sampler_crema_sparse_decm_prob_graph() (in module NEMtropy.ensemble_generator) ensemble_sampler_crema_sparse_ecm_prob_graph() (in module NEMtropy.ensemble_generator) ensemble_sampler_dcm_graph() (in module NEMtropy.ensemble_generator) ensemble_sampler_decm_graph() (in module NEMtropy.ensemble_generator) ensemble_sampler_ecm_graph() (in module NEMtropy.ensemble_generator)

expected_decm() (in module NEMtropy.models_functions) expected_decm_exp() (in module NEMtropy.models_functions) expected_degree_cm() (in module NEMtropy.models_functions) expected_ecm() (in module NEMtropy.models_functions) expected_in_degree_dcm() (in module NEMtropy.models_functions) expected_in_degree_dcm_exp() (in module NEMtropy.models_functions) expected_in_stregth_crema_directed() (in module NEMtropy.models_functions) expected_in_stregth_crema_directed_sparse() (in module NEMtropy.models_functions) expected_out_degree_dcm() (in module NEMtropy.models_functions) expected_out_degree_dcm_exp() (in module NEMtropy.models_functions) expected_out_strength_crema_directed() (in module NEMtropy.models_functions) expected_out_strength_crema_directed_sparse() (in module NEMtropy.models_functions) expected_strength_crema_undirected() (in module NEMtropy.models_functions) expected_strength_crema_undirected_sparse() (in module NEMtropy.models_functions)

I

in_degree() (in module NEMtropy.network_functions) in_strength() (in module NEMtropy.network_functions) is_a_link_cm() (in module NEMtropy.ensemble_generator) is_a_link_crema_decm_det() (in module NEMtropy.ensemble_generator) is_a_link_crema_decm_prob() (in module NEMtropy.ensemble_generator) is_a_link_crema_ecm_det() (in module NEMtropy.ensemble_generator) is_a_link_crema_ecm_prob() (in module NEMtropy.ensemble_generator) is_a_link_crema_sparse_decm_prob() (in module NEMtropy.ensemble_generator) is_a_link_crema_sparse_ecm_prob() (in module NEMtropy.ensemble_generator) is_a_link_dcm() (in module NEMtropy.ensemble_generator) is_a_link_decm() (in module NEMtropy.ensemble_generator) is_a_link_ecm() (in module NEMtropy.ensemble_generator) iterative_cm() (in module NEMtropy.models_functions) iterative_cm_exp() (in module NEMtropy.models_functions)

iterative_crema_directed() (in module NEMtropy.models_functions) iterative_crema_directed_sparse() (in module NEMtropy.models_functions) iterative_crema_directed_sparse_2() (in module NEMtropy.models_functions) iterative_crema_sparse_2() (in module NEMtropy.models_functions) iterative_crema_undirected() (in module NEMtropy.models_functions) iterative_crema_undirected_sparse() (in module NEMtropy.models_functions) iterative_dcm() (in module NEMtropy.models_functions) iterative_dcm_exp() (in module NEMtropy.models_functions) iterative_dcm_exp_2() (in module NEMtropy.models_functions) iterative_decm() (in module NEMtropy.models_functions) iterative_decm_exp() (in module NEMtropy.models_functions) iterative_decm_exp_2() (in module NEMtropy.models_functions) iterative_ecm() (in module NEMtropy.models_functions) iterative_ecm_exp() (in module NEMtropy.models_functions)

L

linsearch_fun_CM() (in module NEMtropy.models_functions) linsearch_fun_CM_exp() (in module NEMtropy.models_functions) linsearch_fun_CM_exp_fixed() (in module NEMtropy.models_functions) linsearch_fun_CM_fixed() (in module NEMtropy.models_functions) linsearch_fun_crema_directed() (in module NEMtropy.models_functions) linsearch_fun_crema_directed_fixed() (in module NEMtropy.models_functions) linsearch_fun_crema_undirected() (in module NEMtropy.models_functions) linsearch_fun_crema_undirected_fixed() (in module NEMtropy.models_functions) linsearch_fun_DCM() (in module NEMtropy.models_functions) linsearch_fun_DCM_exp() (in module NEMtropy.models_functions) linsearch_fun_DCM_exp_fixed() (in module NEMtropy.models_functions) linsearch_fun_DCM_fixed() (in module NEMtropy.models_functions) linsearch_fun_DECM() (in module NEMtropy.models_functions) linsearch_fun_DECM_exp() (in module NEMtropy.models_functions) linsearch_fun_DECM_exp_fixed() (in module NEMtropy.models_functions) linsearch_fun_DECM_fixed() (in module NEMtropy.models_functions) linsearch_fun_ECM() (in module NEMtropy.models_functions) linsearch_fun_ECM_exp() (in module NEMtropy.models_functions) linsearch_fun_ECM_exp_fixed() (in module NEMtropy.models_functions) linsearch_fun_ECM_fixed() (in module NEMtropy.models_functions) loglikelihood_cm() (in module NEMtropy.models_functions) loglikelihood_cm_exp() (in module NEMtropy.models_functions) loglikelihood_crema_directed() (in module NEMtropy.models_functions) loglikelihood_crema_directed_sparse() (in module NEMtropy.models_functions) loglikelihood_crema_undirected() (in module NEMtropy.models_functions) loglikelihood_crema_undirected_sparse() (in module NEMtropy.models_functions) loglikelihood_dcm() (in module NEMtropy.models_functions) loglikelihood_dcm_exp() (in module NEMtropy.models_functions) loglikelihood_decm() (in module NEMtropy.models_functions) loglikelihood_decm_exp() (in module NEMtropy.models_functions) loglikelihood_ecm() (in module NEMtropy.models_functions) loglikelihood_ecm_exp() (in module NEMtropy.models_functions) loglikelihood_hessian_cm() (in module NEMtropy.models_functions) loglikelihood_hessian_cm_exp() (in module NEMtropy.models_functions) loglikelihood_hessian_crema_directed() (in module NEMtropy.models_functions)

loglikelihood_hessian_crema_undirected() (in module NEMtropy.models_functions) loglikelihood_hessian_dcm() (in module NEMtropy.models_functions) loglikelihood_hessian_dcm_exp() (in module NEMtropy.models_functions) loglikelihood_hessian_decm() (in module NEMtropy.models_functions) loglikelihood_hessian_decm_exp() (in module NEMtropy.models_functions) loglikelihood_hessian_diag_cm() (in module NEMtropy.models_functions) loglikelihood_hessian_diag_cm_exp() (in module NEMtropy.models_functions) loglikelihood_hessian_diag_crema_directed() (in module NEMtropy.models_functions) loglikelihood_hessian_diag_crema_directed_sparse() (in module NEMtropy.models_functions) loglikelihood_hessian_diag_crema_directed_sparse_2() (in module NEMtropy.models_functions) loglikelihood_hessian_diag_crema_sparse_2() (in module NEMtropy.models_functions) loglikelihood_hessian_diag_crema_undirected() (in module NEMtropy.models_functions) loglikelihood_hessian_diag_crema_undirected_sparse() (in module NEMtropy.models_functions) loglikelihood_hessian_diag_dcm() (in module NEMtropy.models_functions) loglikelihood_hessian_diag_dcm_exp() (in module NEMtropy.models_functions) loglikelihood_hessian_diag_decm() (in module NEMtropy.models_functions) loglikelihood_hessian_diag_decm_exp() (in module NEMtropy.models_functions) loglikelihood_hessian_diag_ecm() (in module NEMtropy.models_functions) loglikelihood_hessian_diag_ecm_exp() (in module NEMtropy.models_functions) loglikelihood_hessian_ecm() (in module NEMtropy.models_functions) loglikelihood_hessian_ecm_exp() (in module NEMtropy.models_functions) loglikelihood_prime_cm() (in module NEMtropy.models_functions) loglikelihood_prime_cm_exp() (in module NEMtropy.models_functions) loglikelihood_prime_crema_directed() (in module NEMtropy.models_functions) loglikelihood_prime_crema_directed_sparse() (in module NEMtropy.models_functions) loglikelihood_prime_crema_directed_sparse_2() (in module NEMtropy.models_functions) loglikelihood_prime_crema_sparse_2() (in module NEMtropy.models_functions) loglikelihood_prime_crema_undirected() (in module NEMtropy.models_functions) loglikelihood_prime_crema_undirected_sparse() (in module NEMtropy.models_functions) loglikelihood_prime_dcm() (in module NEMtropy.models_functions) loglikelihood_prime_dcm_exp() (in module NEMtropy.models_functions) loglikelihood_prime_decm() (in module NEMtropy.models_functions) loglikelihood_prime_decm_exp() (in module NEMtropy.models_functions) loglikelihood_prime_ecm() (in module NEMtropy.models_functions) loglikelihood_prime_ecm_exp() (in module NEMtropy.models_functions)

M

matrix_regulariser_function() (in module NEMtropy.solver_functions) matrix_regulariser_function_eigen_based() (in module NEMtropy.solver_functions) module NEMtropy.ensemble_generator NEMtropy.graph_classes NEMtropy.matrix_generator NEMtropy.models_functions NEMtropy.network_functions NEMtropy.solver_functions

N

NEMtropy.ensemble_generator module NEMtropy.graph_classes module NEMtropy.matrix_generator module

NEMtropy.models_functions module NEMtropy.network_functions module NEMtropy.solver_functions module

O

out_degree() (in module NEMtropy.network_functions)

out_strength() (in module NEMtropy.network_functions)

P

pmatrix_cm() (in module NEMtropy.models_functions)

pmatrix_dcm() (in module NEMtropy.models_functions)

R

random_binary_matrix_generator_custom_density() (in module NEMtropy.matrix_generator) random_binary_matrix_generator_custom_density_sparse() (in module NEMtropy.matrix_generator) random_binary_matrix_generator_dense() (in module NEMtropy.matrix_generator) random_gaussian_weighted_matrix_generator_custom_density_sparse() (in module NEMtropy.matrix_generator)

random_graph_nx() (in module NEMtropy.matrix_generator) random_uniform_weighted_matrix_generator_custom_density_sparse() (in module NEMtropy.matrix_generator) random_weighted_matrix_generator_dense() (in module NEMtropy.matrix_generator) random_weighted_matrix_generator_gaussian_custom_density() (in module NEMtropy.matrix_generator) random_weighted_matrix_generator_uniform_custom_density() (in module NEMtropy.matrix_generator)

S

set_adjacency_matrix() (NEMtropy.graph_classes.DirectedGraph method) (NEMtropy.graph_classes.UndirectedGraph method) set_degree_sequences() (NEMtropy.graph_classes.DirectedGraph method) (NEMtropy.graph_classes.UndirectedGraph method) set_edgelist() (NEMtropy.graph_classes.DirectedGraph method) (NEMtropy.graph_classes.UndirectedGraph method)

solve_tool() (NEMtropy.graph_classes.DirectedGraph method) (NEMtropy.graph_classes.UndirectedGraph method) solver() (in module NEMtropy.solver_functions) strength() (in module NEMtropy.network_functions) sufficient_decrease_condition() (in module NEMtropy.solver_functions)

U

UndirectedGraph (class in NEMtropy.graph_classes)